Alternative Program Classrooms serve children who experience emotional, behavioral and relational difficulties and have been unable to make adequate academic and emotional/social developmental progress in a regular classroom . The younger class of the alternative program is located at the Blanchard Memorial School in Boxborough (grades K-2), and the Russell Street Elementary School in Littleton (grades 2-4) while the older classes are located at the Blanchard Memorial School in Boxborough (grades 4-6) and grades 6-8 are located at the Concord Middle School.

Colebrook High School is an alternative school in Acton for students who have not succeeded in traditional schools, and who require a specialized, small school community with intensive academic and therapeutic supports.